HUMAN AND MOUSE NUMTs

This page shows an analysis of the NUMT's that can be found on the NCBI website by looking at the Genomes for Homo sapiens and Mus musculus.
...
NUMT's are fragmentary copies of mitochondrial DNA that are to be found in nuclear chromosomes.
Here the available fragments that correspond to 5826-5963 are compared.

The 'age' of the NUMT's possibly ranges between 4-20 million years.


The CRS sequence for tRNA-tyr, the gap, and the first part of the COXI gene is:-
                 5826             5839                      5858                 5875                    5892   gap              5904       CO1
Homo sapiens     t ggtaaaa agagg  cctaa    cccct gtct ttaga tttacag tccaa t gctt cact  cagc ca ttttacc  :TCACCCCCACTG:           ATGTTCGCCG ACCGTTGACT ATTCTCTACA AACCACAAAG ACATTGGAAC ACTATACCTA

and the NUMT sequences are:-
NT_004350.18|Hs1_4507    chromosome  1     45008-45073                                                                           45086      (BOLD-ID suggests: Homo Sapiens)
                 T GGTAAAA AGAGG  CTTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC  :TCACCCCCACTG:           ATGTTCGCCG ACCGTTGACT ATTCTCTACA AACCACAAAG ACATTGGAAC ACTATACCTA
....
NT_113955.1|Hs21_111674  chromosome 21     51870-51805
                 t ggtaaaa agagg  cttaa    cccct gtct ttaga tttacag tccaa t gctt cact  cagc ca ttttacc 
....
NT_026437.11|Hs14_26604  chromosome 14  13953834-13953769                                                                        13953757   (BOLD-ID suggests: Pan troglodytes - Chimpanzee)
                 T GGTAAAA AGAGG  CTTAG    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC  :TTATCCCACTG:            ATGTTCGCCG ACCGTTGATT GTTCTCTACA AACCACAAAG ACATTGGAAC ACTGTACCTA 
....
NT_024862.13|Hs17_25018  chromosome 17    343511-343550                                                                          343556     (BOLD-ID suggests: Pan troglodytes - Chimpanzee)
                                                    T TTAGA TTTACAG TCTAA T GCTT TGCT  CAGC CA TCTTACC  :CACTA:                  ATGTTCGCCA ACCGCTGACT ATTCTCAACA AATCATAAAG ATATCGGAAC ACTATATTTA
....
NT_008470.18|Hs9_8627    chromosome  9   2622750-2622685                                                                         2262668    (BOLD-ID fails)
                 T GGTAAAA AGAGG  TTTAG    CCTCT GTCC TTAGA TTTACAG TCTAA T GCTT TACT  CAGC CA TTTTACC  :TCGCCCTACTCCACTT:       acgttggcca accgttgact attctcaact aaccataaag ataccggaac attgtaccta
....
NT_022135.15|Hs2_22291   chromosome  2    19739321-19739385                                                                      19739403   (BOLD-ID fails)
                 t ggtaaaa agagg tcttga    tctct gttt ttaga .ttacag tctaa t gctt .act  cagc ca ttttacc  :TTTTTCTCACTTCACTT:      ATGTTCACCA ACTGTTGACT GTTCTCAGCC AACTATAAAG ATACCGGGAT ATTCTATCTA
....
NT_005403.16|Hs2_5560    chromosome  2  62852343-62852384                                                                        62852406   (BOLD-ID suggests: Equus caballus - Horse)
                                              CT GTCT TCAGA TTTACAG TCTAA T GCTT .GCT  CAGC CA TTTTATA  :CCCCCGCCGCCGCCCCCCT:    GTGTTCACCA ATTGTTGATT GTTTTCAACT AACCACAAAG ATATCGGAAC ACTGTACCTG
....
NT_005403.16|Hs2_5560    chromosome  2  53694116-53694051                                                                        53694036   (BOLD-ID suggests: Aotus trivirgatus - Owl Monkey)
                 T GGTAAAA AGAGG CCTTAA    CCTCT GTCT TTAGA TTTACAG TCTAA T GCTT .GCT  CAGC CA TTTTACC  :CGCTCCCCCGACCT:         ATGTTCATCA ATCGTTGATT GTTTTCAACT AACCACAAAG TCACCGGAAC ACTATACCTG
....
NT_008583.16|Hs10_8740   chromosome 10  19903914-19903852                                                                        19903842   (BOLD-ID suggests: Sciurus vulgaris - Red Squirrel) 
                     TAAAA AGATG GCTCAA    CATCT GTCT TTAGA TTTACAG TCCAA T GCTT .GCT  CAGC CA TTTTACC  :CTTATACCT:              ATGTTCATCT ATCGCTGACT ATTTTCAACT AACCATAAAG ACATCGGAAC ATTATATTTA
....
NT_007758.11|Hs7_7915    chromosome  7   6832023-6831973                                                                         6831963    (BOLD-ID suggests: Equus asinus - Donkey)
                 T GGTAAAA AGAGA CCTTTGA   CCTCT GTTT TCAGA TTTACAG TCTAA T GCTT .GCT  CAGC CA TTTTACC  :ccttgtaccc:             atgttcatga attgccgatt attttcaact aaccacatag gcactgcctt aagcctccta
....
NT_037887.4|Hs16_37891   chromosome 16   3359298-3359263                                                                         3359250    (BOLD-ID suggests: Neacomys paracou - Paracou spiny mouse) 
                                                        aga tttacag tctaa t gctt .act  cagc ca ttttacc  :CTTTTCCCACTT:           AAGTTCATTA ATCGTTGATT GTTTTCAACT AACCACAAAG ACATCAGAAT ACTATATTTA
....
NT_023935.17|Hs9_2409    chromosome  9  10520847-10520784                                                                        10520769   (BOLD-ID fails)
                 t gataaaa ..agg ccttga    cctct gtct ttaaa tttacag tctaa t gttt .act  cagc ca ttttaca  :TTTTTTTCCCACTT:         ATGTTCATCA ATCGTTGATT GTTTTCAACT AACCACAAAG ATACTGGAAC ACTACACCTG
....
NT_033899.7|Hs11_34054   chromosome 11   6839058-6838993                                                                         6838980    (BOLD-ID fails)
                 T GGTAAAA AGAGG CCTTGA    CCTCT GTCT TTAGA TTTATAG TCTAA T GCTT .ACT  CAGC CA TTTTACC  :TTTTTTTCACTT:           ACGTTCATCA ATCATTGATT GTTTTCAACT ACCCACAAAG ACATCAGAAC ACTATATCTG
....
NT_008046.15|Hs8_8203    chromosome  8  25165016-25164951                                                                        25164935   (BOLD-ID fails)
                 t ggtaaaa agagg ccttaa    cctcc atct tcaga tttgcag tctaa t gttt .act  cagc ca ttttacc  :ctttttcactccactt:       atgttcatca accgttgatt gttttcaagc aaccacaaag acatgggaac attatagtta
....
NT_008046.15|Hs8_8203    chromosome  8  47986189-47986254                                                                        47986267   (BOLD-ID suggests: Bos taurus - Cow) 
                 t ggtaaaa agagg ccttga    cctct gtct tcaga tttacag tctaa g gctt .att  cagt ca ttttacc  :TTTTTCCCACTT:           ATGTTCATCA ATTGCTGATT GTTTTCAACT AACCACAAAG ATATCGGAAC ACTATACCTG
....
NT_004836.17|Hs1_4993    chromosome  1   2862228-2862163                                                                         2862150    (BOLD-ID fails)
                 T GGTAAAA AGAGG TCTTGA    CCTCT GTCT TTAGA TTTATAG TCTAA T GCTT .ACT  CAGT CA TTTTACC  :CCTTTTTCCACTA:          atgttcatca accattgatt gttttcaact aatcacaaag atatcggaac actgtatctg
....
NT_010718.15|Hs17_10875  chromosome 17  19105896-19105961                                                                        19105974   (BOLD-ID suggests: Aotus trivirgatus - Owl Monkey)
                 T GGTAAAA AGAGG TCTTGA    CCTCT GTCT TTAGA TTTACAG TCTCA T GCTT .ACT  CAGC CA TTTTACC  :TTTTTCCCACTT:           ATGTTCATCA GTCGTTGATT GTTTTCAACT AACCACAAAG ATATTGGAAC ACTATACCTG
....
NT_008413.16|Hs9_8570    chromosome  9   5086587-5086652                                                                         5086666    (BOLD-ID suggests: Aotus trivirgatus - Owl Monkey) 
                 T GGTAAAA AGAGG TCTTGA    CCTCT GTCT TTAGA TTTACAG TCCAA T GCTT .ACT  CAGC CA TTTTACC  :CTTTTTTCCACTT:          ATGTTCATCA ATTGTTGATT GTTTTCAACC AATCACAAAG CTATCGGAAC ACTATACCTG
....
NT_007758.11|Hs7_7915    chromosome  7   1603446-1603385                                                                         1603368    (BOLD-ID suggests: Aotus trivirgatus - Owl Monkey) 
                      AAAA AGAGG CCTTGA    CCTCT GTCT TTAGA TTTACAG TCTAA T GCTT .ACT  CAGC CA TTTTACC  :TTTTCTCACTTCACTT:       ATGTTCACCA ACTGTTGATC GTTCTCAACC AACCATAAAG ATATCAGGAC ATTATACTTG
....
NT_023629.12|Hs7_23785   chromosome  7    254065-254108                                                                          254125     (BOLD-ID suggests: Ostichthys japonicus - Giant Squirrelfish)
                                              CT GTCT TTAGA TTTACAG TCTAA T GCTT .ACT  CGGC CT TTTTACC  :TTTTCTCATCTCACCT:       ATGTTCACCA ACCGTGGATT GTTCTCATCC AACCATAAAG ATATCGGGAC ATTATACCTG
....
NT_011630.14|HsX_11787   chromosome  X   2759315-2759272                                                                         2759256    (BOLD-ID suggests: Aotus trivirgatus - Owl Monkey) 
                                              CT GTCT TTAGA TTTACAG TCTAA T GCTT .ACC  CAGC CA TTTTACC  :TTTTTTTCCCCACTT:        ATGTTCATTA ATTGTTGATT GTTTTCAACT AACCACAAAG ACATAGGAAC GCTATACCTG
....
NT_023935.17|Hs9_24091   chromosome  9  12344136-12344093                                                                        12344078   (BOLD-ID suggests: Rhinolophus thomasi - Thomas's Horseshoe Bat)
                 T GGTAAAA ..AGG CCTTGA    CCTCT GTCT TTAGA TTTATAG TCTAA T GCTT .ACT  CAGC CA TTTTACC  :TTTTTTCCCCACTT:         ATGTTCATCA ATCGTTGATT GTTTTCAACT AACCACAAAG ATACCGGAAC ACTATACCTG
....
NT_019273.18|Hs1_19429   chromosome  1   3256397-3256362                                                                         3256348    (BOLD-ID suggests: Rhinolophus thomasi - Thomas's Horseshoe Bat)
                                                        aga tttacag tctaa t gctt .act  cagc ca tttaacc  :TTTTTCCCCACTT:          AGGTTCATCA ATCATTGATT GTTTTCAAAT AACCACAAAG ATATCGGAAC ACTATACCTG
....
NT_007914.14|Hs7_8071    chromosome  7   2093490-2093425                                                                         2093411    (BOLD-ID fails)
                 T GGTAAAA AGAGG CCTTGA    CCTCT GTCT TTAGA TTTACAG TCTAA T GCTT .ACT  CAGC CA TTTTACC  :TTTTTTTCCACTT:          ATGTTCATCA ATCGTTGATT GTTTTCAACT AACCATAAAG ATACCGGAAC ATTCTACCTG
....
NT_016354.18|Hs4_16510   chromosome  4  80930611-80930549                                                                        80930536   (BOLD-ID fails)
                     TAAAA AGAGG CCTTGA    CCTCT GTCT TTAGA TTTACAG TCTAA T GCTT .ATT  CAGC CA CTTTACC  :TTTCCCCCACTT:           ATGTTCATCA ATCGTTGATT GTTTTCAACT AACCACAAAG ATATCGGAAC ACTATACCTG
....
NT_113819.1|HsY_111538   chromosome  Y     94993-95059                                                                           95079      (BOLD-ID suggests: Pongo pygmaeus - Orangutan)
                 T GGTAAAA ACAGG CCTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  TAGT CA TTTTACC  :cttttttctcacttcattt:    atgttggctg acagtcgact attctcaacc aaccataaag atatcgggac attatattta
....
NT_113889.1|Hs4_111608   chromosome  4     15798-15864                                                                           15884      (BOLD-ID suggests: Pongo pygmaeus - Orangutan)
                 T GGTAAAA ACAGG CCTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAGT CA TTTTACC  :CTTTTTTCTCACTTCATTT:    ATATTGGCTG AGAGTTGACT ATTCTCAACC AACCATAAAG ATATCGGGAC ATTATATTTA
....
NT_022135.15|Hs2_22291   chromosome  2  20849638-20849574                                                                        20849556   (BOLD-ID suggests: Urotrichus talpoides - Greater Japanese Shrew-mole)
                 T GGTAAAA AGAGG TCTTGA    CCTCT GTTT TCAGA TT.ACAG TCTAA T GCTT .ACT  CAGC CA TTTTACC  :TTTTTCTCACTTCACTT:      ATGTTCACCA ACTGTTGACT GTTCTCAGCC AACCATAAAG ATATCGGGAT ATTCTATCTA
....
NT_026970.9|Hs2_27130    chromosome  2    240350-240311                                                                          240235     (BOLD-ID suggests: Aotus trivirgatus - Owl Monkey)
                 T GGTAAAA AGAGG TCTTGA    CCTCT GTTT TCAGA TGTACAG                                     :CTTTTTTCTCACTTCATTT:    ATGTTCGCCG ACAGTTGACT ATTCTCAACC AACCATAAAG ATATCGGGAC ATTGTATTTA
....
NT_113961.1|Hs22_111680  chromosome 22     78231-78297                                                                           78231      (BOLD-ID suggests:- Aotus trivirgatus - Owl Monkey)
                 T GGTAAAA ACAGG CCTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAGT CA TTTTACC  :CTTTTTTCTCACTTAATTT:    ATGTTGGCTG ACAGTTGACT ATTCTCAACC AACCATAAAG ATATCGGGAC ATTATATTTA
....
NT_113954.1|Hs21_111673  chromosome 21     88777-88843                                                                           88863      (BOLD-ID suggests:- Aotus trivirgatus - Owl Monkey)
                 T GGTAAAA ACAGG CGTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAGT CA TTTTACC  :CTTTTTTCTCACTTCATTT:    ATGTTGGCTG ACAGTTGACT ATTCTCAACC AACCATAAAG ATATCGAGAC ATTATATTTA
....
NT_113794.1|Hs1_111513   chromosome  1     10380-10446                                                                           10478      (BOLD-ID suggests:- Aotus trivirgatus - Owl Monkey)
                 T GGTAAAA ACAGG CGTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAGT CA TTTTACC  :CTTTTTTCTCACTTCATTT:    ATGTTGGCTG ACAGTTGACT AATCTCAACC AACCATAAAG ATATCGGGAC ATTATATTTA
....
NT_113795.1|Hs1_111514   chromosome  1    127184-127118                                                                          127131     (BOLD-ID suggests:- fails)
                 T GGTAAAA ACAGG CGTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAAT CA TTTTACC  :CTTTTTTCTCACTTCATTT:    ATGTTGGCTG ACAGTTGACT ATTCTCAACC AACCATAAAG ATATCGGGAC ATTATATTTA
....
NT_113796.1|Hs1_111515   chromosome  1       658-724                                                                             756        (BOLD-ID suggests:- Aotus trivirgatus - Owl Monkey)
                 T GGTAAAA ACAGG CGTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAGT CA TTTTACC  :CTTTTTTCTCACTTCATTT:    ATGTTGGCTG ACAGTTGACT ATTCTCAACC AACCATAAAG ATATCGAGAC ATTATATTTA
....

And there are 5 Mouse NUMTs. NT_039206.5|Mm2_39246_35 Mus musculus chromosome 2 38001-37935 37933 (BOLD-ID suggest: Mus musculus - Mouse) T GGTAAAA AGAGG ATTTAAA CCTCT GTGT TTAGA TTTACAG TCTAA T GCTT .ACT CAGC CA TTTTACC :T: ATGTTCATTA ATCGTTGATT ATTCTCAACC AATCACAAAG ATATCGGAAC CCTATATCTG .... NT_109320.2|Mm5_108190_35 Mus musculus chromosome 5 8514748-8514813 8514815 (BOLD-ID fails) T GAAAAAA AGAGG GCCTAC CCTCT GTGT TTAAA TTTACAG TCTAA T GCTT .ACT GAGC CA TCTTACT :T: ATGTTTGTAA ATCATTGACT ATTCACAACT AACCATAAAG ATATGGGAGC CCTGTATCTC .... NT_094510.3|Mm6_94147_35 Mus musculus chromosome 6 11358196-11358142 11358141 g atttaga cttct gtat ttaga tttatag tctga c gatt .cct cagc ca tgttacc :T: atgtt .... NT_039472.5|Mm9_39512_35 Mus musculus chromosome 9 1909492-1909550 t gataaaa agagg gcttaa tttct gtgt ttaga tttacag tctaa t gctt .act caac ca .... NT_039482.5|Mm9_39522_35 Mus musculus chromosome 9 8863496-8863426 t ggtacaa aggga acttaaa cccct gtgt ttaga tttacat tctga ....

And, here are some Dog NUMTs NW_876323 Canis chromosome 7 25837263-25837195 t ggtaaaa acagg actcaa cctgt cttt agact ttaga ..cttag tctaa t gctt .act cagc ca ttttacc .... NW_876254 Canis chromosome 12 62692343-62692278 t gacaaaa agagg actcaa cctct gtct ttagg tttagag gttaa t gctt .act cagc ca ttttact .... NW_876267 Canis chromosome 19 1834592-18364525 t ggtaaaa agagg acttaaa ccact attt ttaga tttacag tctaa t gctt tcat cagc ca ttttacc

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2007