'tRNA-cys' mutations and comparisons

The transfer RNA for cysteine is one of the transfer RNA's of 'mitochondrial DNA'.
It is located at Bases 5761 - 5826. (All numbering is from CRS.)


Complemented     AGCTCCG AG GTGA TTT TCAT A TTGAA TTGCAAA TTCGA AGAA GCAGC TTCAAA CCTGC CGGGGCT T

                 5761            5774                       5794                  5811
Homo sapiens     A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT
Pan paniscus     a agccccg gcagg tttgaa    gctgc ttct ttgaa tttgcaa ttcaa t atga  aaa  tcac ct cagagct
Pan troglodytes  a agccccg gcagg tttgaa    gctgc ttct tcgaa tttgcaa ttcaa t atga  aaa  tcac ct cagagct
Gorilla gorilla  a agccccg gcagg tttgaa    gctgc ttct tcgaa tttgcaa ttcaa t atga  aat  tcac ct cggagct
Pongo pygmaeus   a agccccg gcagg ccttaaa   gctgc tcct tcgaa tttgcaa ttcaa c atga  caa  tcac ct cagggct
Pongo abelii     a agccccg gcagg ccttaaa   gctgc tcct tcgaa tttgcaa ttcaa c atga  caa  tcac ct cggggct
Hylobates lar    a agccccg gcagg attgaa    gctgc tcct ttgaa tttgcaa ttcaa c gtga  aaa  ccac tt cgggact
Macaca Sylvanus  a agccccg gcaga aactttgga actgc tcct ttgaa tttgcaa ttcaa c atga  aaa  tcac ct cggagct
Macaca Mulatta   a agccccg gcaga aactctaag actgc tcct ttgaa cttgcaa ttcaa c atga  aaa  tcac ct cggggct
Papio hamadryas  a agccccg gcaga aacttaaa  gctgc tcct tcgaa cttgcaa ttcaa t gtga  aaa  tcac ct cggggct
Cercopithicus    a agccccg gcaga aactcaaa  actgc tcct ttaaa cttgcaa tttaa c atga  aaa  tcac ct cggggct
Colobus Guereza  a agccccg gcaga ggtcttaa  gctgc tcct ttgaa tttgcaa ttcaa c atga  aaa  tcac ct cgggact
Trachypithecus   a agccccg gcaga aatcta    actgc tcct ttgaa tttgcaa ttcaa c atga  aaa  ccac ct cggggct
Cebus albifrons  a agccccg gcagc attgaa    gctgc ttct ttgaa tttgcag ttcaa c atga cagt  tcac ct cagggct
Nycticebus       a agccccg gcaga attgaa    gctgc tcct ttgaa tttgcaa ttcaa t atga ttta  tcac ct cgaggcc
Lemur Catta      a agccccg gcaga attgaa    gctgc ttct ttgaa tttgcaa tccaa c gtga  tat  tcac ta cagggct
Tarsius          a agtcccg gcaga attgaa    gctgc ttct ttgaa tttgcaa ttcaa t atga  tat  tcac tt caggact
Tupaia           a agccccg gcagg attgaa    gctgc ttct tcgaa tttgcaa ttcga c atgg attct ccac ct cagggct
Cynocephalus     a agccccg gcaga attgaa    gctgc tctt ctgaa tttgcaa ttcaa c gtga taaa  tcac ct caaggct

Cervus unicolor  a agccccg gcaga gtttgaa   gctgc ttct ttgaa tttgcaa ttcaa c atga aatt  tcac ca caggact

Mammoth
DQ188829         a agccccg gcaga attgaa    gctgc ttttttcgaa tttgcag ttcga c atgt ttac  actt tc aaggcct
EU153444         a agccccg gcaga attgaa    gctgc tttt tcgaa tttgcag ttcga c atgt ttac  actt tc aaggcct

Human NUMT sequences:-
NT_004350.18|Hs1_4507    chromosome  1     44943-45008
                 A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CAGAGCT
NT_004836.17|Hs1_4993    chromosome  1   2862286-2862228
                           GCAGG ATTGAA    GCTGC TCCT TTGAA TTTGCAA TTCAA C ATGA AAAA  TCAC CT CAGGGCT
NT_113794.1|Hs1_111513   chromosome  1     10323-10373
                           GCAGG ATTGAA    GCTGC TTCT TTGAA TTTACAA TTCAA C ATGA  AAA  TCAC CT
NT_113795.1|Hs1_111514   chromosome  1    127241-127191
                           GCAGG ATTGAA    GCTGC TTCT TTGAA TTTACAA TTCAA C ATGA  AAA  TCAC CT
NT_113796.1|Hs1_111515   chromosome  1       601-651
                           GCAGG ATTGAA    GCTGC TTCT TTGAA TTTACAA TTCAA C ATGA  AAA  TCAC CT
NT_005403.16|Hs2_5560    chromosome  2   6329837-6329778
                 A AGCCCCC GCAGG ATTGAA    GTTGC TCCT TTGAA TTTGCAA TTCAA C ATGA  TAA  TCAC CT C
NT_005403.16|Hs2_5560    chromosome  2  53694174-53694116
                           GCAGG ATTGAA    GCTGC ACCT TCGAA TTTGCAA TTCAA C ATGA AAAA  TCTC CT CAGGGCT
NT_005403.16|Hs2_5560    chromosome  2  62852255-62852304
                 A AGCCACG GCAGG ATTGAA    GCTGC TCCT TTGAA TTTGCAA TTCAA C ATGA
NT_022135.15|Hs2_22291   chromosome  2   6491867-6491927
                 A AGCCCCG GCAGG ATAGAA    GCTGC TCCT TTAAA TTTGCAA CTCAA C ATGA GAAA  TCAC CT C
NT_022135.15|Hs2_22291   chromosome  2  19739256-19739317
                 A AGCCCCG GCAGG ATTGAA    GCTGC TTCT TTGAA TTTGCAA TTCAA C ATGA  AAA  TCAC CT CGG
NT_022135.15|Hs2_22291   chromosome  2  20849689-20849642
                                  TTGAA    GCTGC TTGT TTGAA TTTGCAA TTCAA C ATGA  AAA  TCAC CT CGG
NT_022135.15|Hs2_22291   chromosome  2  29682871-29682822
                     CCCCG GCAGG ATTGAA    GCTGC TCCT TTGAA TTTGCAA TTCGA T ATGA  AAA  
NT_026970.9|Hs2_27130    chromosome  2    240407-240354
                           GCAGG ATTGAA    GCTGC TTCT TTGAA TTTACAA TTCAA C ATGA  AAA  TCAT CT CGG
NT_005612.15|Hs3_5769    chromosome  3  59132678-59132643
                                  TTGAA    GCTGC TCCT TTGAA TTTGCAA TTCAA C ATGA
NT_016354.18|Hs4_16510   chromosome  4  80930680-80930620
                 A AGCCCCA GCAGG ATTGAA    GCTGC TCCT TTGAA TTTTCAG TTCAA C ATGA GAAA  TCACCTC
NT_016354.18|Hs4_16510   chromosome  4  88698340-88698392
                 A AGCCCCA GCAGG ATTGAA    GCTGC TCCT TTGAA TTTGCAA TTCAA C ATGA  AAA
NT_113889.1|Hs4_111608   chromosome  4     15741-15794
                           GCAGG ATTGAA    GCTGC TTCT TTGAA TTTACAA TTCAA C GTGA  AAA  TCAC CT CGG
NT_007758.11|Hs7_7915    chromosome  7   1603515-1603454
                 A AGCCCCA GCAGG ATTCAA    GCTGC TCCT TTGAG TTTGCAA TTCAA C ATGA  AAA  TCAC CT CGG
NT_007758.11|Hs7_7915    chromosome  7   6832093-6832060
                                  TTGAA    GCTGC TCCT TTGAA TTTGCAA TTCAA T AT
NT_007914.14|Hs7_8071    chromosome  7   2093549-2093512
                         G GCAGG ATTGAA    GCTGC TCCT TCGAA TTTGCAA TTCAA
NT_023629.12|Hs7_23785   chromosome  7    253933-253992
                 A AGCCCCA GCAGG ATTGAA    GGTGC TCCT TTGAA TTTGCAA TGCAA C ATGA  AAA  TCAC CT C
NT_008046.15|Hs8_8203    chromosome  8  25165081-25165016
                 a agctgct ccttt gaactt    agtct gaat tttca tgttgaa ttcaa c atga  aaa  tcac ct cgggact
NT_008046.15|Hs8_8203    chromosome  8  47986123-47986175
                 A AGCCCCA GTAGG ATTGAA    GCTGC CCCT TTGAA TTTGCAA TTCAA C ATGA  AAA
NT_008413.17|Hs9_8570    chromosome  9   5086521-5086565
                 A AGCCCTG GCAGC ATTGAA    GCTGC TCCT TTGAA TTTGCAA TTCAA
NT_008470.18|Hs9_8627    chromosome  9   2622808-2622756
                         G GCAGG ATTGAA    GCTGC TTCT TTGAA TTTGCAA TTCAA C ATGA  AAG  TCAC CT C
NT_023935.17|Hs9_24091   chromosome  9  12344207-12344162
                                   TGAA    GATGC TCCT TTGAA TTTGCAA TTCAA C ATGA GAAA  TCAC CT C
NT_033899.7|Hs11_34054   chromosome 11   6839110-6839058
                                  TTGAA    GCTGC CCCT TTGAA TTCGCAA TTCAA C ATGA GAAA  TCAC CT CAGGGCT  
NT_026437.11|Hs14_26604  chromosome 14  13953899-13953834
                 A AGCCCCG CCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CAGAGCT
NT_010718.15|Hs17_10875  chromosome 17  19105830-19105879
                 A AGCCCTG GCAGG ATTGAA    GCTGC TCCT TTGAA TTTGCAA TTCAA C ATGA
NT_024862.13|Hs17_25018  chromosome 17    343430-343481
                 A AGCCCAG GCAGG ATTGAA    GCTGC TTCT TTGAA TTTGCAA TTCAA C ATGA  AA
NT_113954.1|Hs21_111673  chromosome 21     88720-88777
                           GCAGG ATTGAA    GCTGC TTCT TTGAA TTTACAA TTCAA C ATGA  AAA  TCAC CT TGGGACT
NT_113955.1|Hs21_111674  chromosome 21     51935-51870
                 A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CAGAGCT  
NT_011512.10|Hs21_11669  chromosome 21  22925094-22925028
                 A AGCCCTG GCAGA ATTGAA    GCTGC ATCT TTGAG TTTGCAA TTTGA T GTGA CTAT  TCAC CT TGAGGCA
NT_113961.1|Hs22_111680  chromosome 22     78174-78231
                           GCAGG ATTGAA    GCTGC TTCT TTGAA TTTACAA TTCAA C ATGA  AAA  TCAC CT CGGGACT
NT_011630.14|HsX_11787   chromosome  X   2759403-2759337
                 A AGCCCCA GCAGG ACTGAA    GCTTC TCCT TTGAA TTTGCAA TTCAA C ATGA GAAA  TCCC CT CAGGGCT
NT_113819.1|HsY_111538   chromosome  Y     94936-94993
                           GCAGG ATTGAA    GCTGC TTCT TTGAA TTTACAA TTCAA C GTGA  AAA  TCAC CT TGGGACT

CRS              A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT


..............
Pan Troglodytes  a agccccg gcagg tttgaa    gctgc ttct tcgaa tttgcaa ttcaa t atga  aaa  tcac ct cagagct

NW_001229478.1 Pan Troglodytes NUMT Chromosome  1
                 A AGCCCCG GCAGG ..TTTGAA  GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CAGAGCT
NW_001229479.1 Pan troglodytes NUMT 17300-17365
                 A AGCCCCG GCAGG ..TTTGAA  GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CAGAGCT  
NW_001234090.1 Pan Troglodytes NUMT chromosome  4  1348603-1348537
                 A AGCCCCA GCAGG ..ATTGAA  GCTGC TCCT TTGAA TTTTCAG TTCAA C ATGA GAAA  TCAC CT CAGAGCT
NW_001238041.1 Pan Troglodytes NUMT chromosome  7  14861-14796
                 A AGCCCCG GCAGG ..TTTGAA  GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CAGAGCT
NW_001240439.1 Pan troglodytes NUMT chromosome  9 4417548-4417614
                 A AGCCCCG GCAGG ..ATTGAA  GCTGC TCCT TTAAA TTTGCAA TTCAA C ATAA AAAA  TTAC CT CAGGGCT
NT_106996.1    Pan Troglodytes NUMT chromosome 21 21997520-21997454
                 A AGCCCTG GCAGA   ATTGAA  GCTGC ATCT TTGAG TTTGCAA TTTAA T GTGA CTAT  TCAC CT TGAGGCA
NW_001251894.1 Pan troglodytes NUMT chromosome  X 243536-243470
                 A AGCCCCA GCAGG ..ACTGAA  GCTTC TCCT TTGAA TTTGCAA TTCAA C ATGA GAAA  TCCC CT CAGGGCT  

..............
Macaca Mulatta   a agccccg gcaga aactctaag actgc tcct ttgaa cttgcaa ttcaa c atga  aaa  tcac ct cggggct

NW_001112559.1 Macaca NUMT chromosome  2   2211993-2212061
                 A AGCCCCG GCAGA AACTCTAAG ACTGC TCCT TTGAA TTTGCAA TTCAA C ATGA  AAA  TCAC CT CGGGGCT
NW_001114167.1 Macaca NUMT chromosome  3   2549271-2549337
                 A AGCCCTG GCAGA ...ATTGAA GCTGC ATCT TTGAG TTTGCAA TTTGA T GTGA CTAT  TCAC CT TGAGGCT
NW_001116467.1 Macaca NUMT chromosome  4    162167-162148
                         G GCAGA AACCTTAAA GCTGC
NW_001118143.1 Macaca NUMT chromosome  5  17470212-17470269
                 A AGCCCCG GCAGA ..GGTTAAA GCTGC TCCT TTGAA TTTGCAA TTCAA C ATGA  AAA  TCAC  
NW_001121149.1 Macaca NUMT chromosome  7   2240773-2240706
                 A AGCCCCG GCAGA .AACTTAAA GCTGC TCCT TTGAA CTTGCAA TCCTA T GTGA  AAA  TCAC CT CAGGGCT
NW_001122912.1 Macaca NUMT chromosome  8   3218156-3218089
                 A AGCCCCG GCAGA .AACTTAAA ACTGC TCCT TTGAA CTTGCAA TCCAA T GTGA  AAA  TCAC CT CAGGGCT
NW_001122911.1 Macaca NUMT chromosome  8   9298039-9298107
                 A AGCCCCG GCAGA AACTCTAAA GCTGC TCCT TTGAA TTTGCAA TTCAA C ATGA  AAA  TCAC CT CGGGGCT
NW_001100388.1 Macaca NUMT chromosome 14   6166535-6166467
                 A AGCCCAG GCAGG ...ATTGAA GCTGC TCCT TTGAA TTTGCAA TTCAA C ATGA GAAA  TCAC TT TAGGGCT
NW_001100391.1 Macaca NUMT chromosome 14   4167244-4167178
                 A AGCCCCG GCAGG ...ATTGAA GCTGC TCCT TTGAA TTTGCAA CTCAA C ATGA GAAA  TCAC CT CAGGGCT  
NW_001101665.1 Macaca NUMT chromosome 15  13860070-13860004
                 A AGCCCCG ACAGG ...ACTGAA GCTGC TTCT TTGAA TTTGCAA TTCAA C ATGA AAAA  TCAC CT CAGGGCT
NW_001102952.1 Macaca NUMT chromosome 16    479055-479123
                 A AGCCCCG GCAGA AACCTTAAA GCTGC TCCT TTGAA CTTGCAA TTCAA T ATGA  AAA  TCAC TT CAGGGCT

..............

Monodelphis      a aacctcg gtagc tttacta   actac tttt ttgaa tttgcaa ttcaa c gtat  taat atac tt caagatt

NW_001581990.1|Mdm7_WGA156_2:12475071-12475138 Monodelphis domestica chromosome  7
                 A AACCTTG GTAGC TTTACTG   ACTAC TTTT TTGAA TTTGCAA TTCAA C GTAT  TAAT ATAC TT CAAGATT

..............

Felix catus
AANG01329795.1|:744-809 Felis catus cont1.329794, whole genome shotgun sequence
                 G AGCCCCA GCAGA ATTGAA    GCTGC TTCT TTGGA TTTGCCA TTTGT A ATGT  TAT  TCAT TA TAGGGCT
................

Bos taurus       A AGCCCCG GCAGA ATTGAA    GCTGC TTCT  CTGAA TTTGCAA TTCAA C GTGT  AAAT TCAC CA CAGGGCT

NW_001494660.1|Bt2_WGA308_3:c1336748-1336681 Bos taurus chromosome 2
                 A AGCTCCA GCAGA ATTGAG    GCTGT TTCT  TTGAA TTTGCAG TTCAG T ATGT TTAAT TCGC CA CAGGACT
NW_001492943.1|Bt11_WGA1451_3:702335-702401 Bos taurus chromosome 11
                 A CAGGAAA TTCAA ATTCAAA   GCTCC TTCT  TTCAG TTTGCAA TTCAA C ATGT  AAAA TTCA CC ATAGGAC
NW_001493021.1|Bt12_WGA1529_3:480969-481035 Bos taurus chromosome 12
                 A AGCCCCG GCAGA ATTGAA    GCTGC TTCT  TTGAA TTTGCAA TTCAA T GTGT  AAAT TCAC CG TATTGGT
NW_001494121.1|Bt22_WGA2429_3:c867066-867000 Bos taurus chromosome 22
                 A AGCCCCG ACAGA ATTGAA    GCTGT ACTCT TTGAT TCTGCAA TTCGG T AAGC  AAA  ACTG AC CACAGGG

..............


Human Mutations found in published genealogical sequences:-
CRS              A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT

G5772A
DQ137399(PNG)    A AGCCCCG GCAAG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT
G5773A
AY714034(India)  A AGCCCCG GCAGA TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT
T5774A
DQ112719(Domin.) A AGCCCCG GCAGG ATTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT
T5774C
AY882396(Adygei) A AGCCCCG GCAGG CTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT 
G5777A
DQ112736(Burki.) A AGCCCCG GCAGG TTTAAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT
G5783A
DQ246821(India)  A AGCCCCG GCAGG TTTGAA    GCTAC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT
T5786C
AY255153(China)  A AGCCCCG GCAGG TTTGAA    GCTGC TCCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT 
T5788C
DQ137402(PNG)    A AGCCCCG GCAGG TTTGAA    GCTGC TTCC TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT  
C5790A
AY714010(India)  A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TAGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAGCT 
A5805G
AY922254(India)  A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAG T ATGA  AAA  TCAC CT CGGAGCT
T5806C
mtDNA301(Euro.)  A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA C ATGA  AAA  TCAC CT CGGAGCT 
G5809A
HNsq0239(Japan)  A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATAA  AAA  TCAC CT CGGAGCT
A5811G
AF347008(San)    A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  GAA  TCAC CT CGGAGCT
A5812G
EU092803(Africa) A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AGA  TCAC CT CGGAGCT
A5813G
DQ341080(Ethi.)  A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAG  TCAC CT CGGAGCT
T5814C
AY195766(S Afr.) A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  CCAC CT CGGAGCT
C5817T
AY495175(Euro.)  A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAT CT CGGAGCT 
G5821A
AY255176(China)  A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CAGAGCT 
G5822A
HNsq0118(Japan)  A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGAAGCT 
A5823G
AY714045(India)  A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGGGCT 
G5824A
AY339408(Euro.)  A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CGGAACT

Neandertal
G5821A 
AM948965         A AGCCCCG GCAGG TTTGAA    GCTGC TTCT TCGAA TTTGCAA TTCAA T ATGA  AAA  TCAC CT CAGAGCT




2008