'tRNA-ser(UCN)' mutations and comparisons

The transfer RNA for serine (UCN) is one of the transfer RNA's of 'mitochondrial DNA'.
It is located at Bases 7446 - 7514. (All numbering is from CRS.)


Complemented     GAAAAAG T CATG GAGGC CATG GG GTTGG CTTGAAA CCAGC TTTG GGGGG TTCGATT CCTTC CTTTTTT G

                 7446            7459                      7480                  7498
Homo sapiens     C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
Pan paniscus     c aaaaaag gaagg aatcgaa  ccccc taaa gctgg tttcaag ccaac cc catg acccc catg a ctttttc
Pan troglodytes  c aaaaaag gaagg aatcgaa  ccccc taaa gctgg tttcaag ccaac cc catg acctc catg a ctttttc
Gorilla gorilla  c aaaaaag gaagg aatcgaa  ccccc caaa gctgg tttcaag ccaac cc catg acctt catg a ctttttc
Pongo pygmaeus   c aaaaaag gaagg aatcgaa  cctcc taaa gctgg tttcaag ccaac cc cata acccc catg a ctttttc
Pongo abelii     c aaaaaag gaagg aatcgaa  cctcc taaa gctgg tttcaag ccaac cc caca acctc catg a ctttttc
Hylobates lar    c aaaaaag gaagg aatcgaa  ccccc taaa actgg tttcaag ccagc cc cata acctc tatg a ctttttc
Macaca Sylvanus  c gaaaaag gagag agtcgaa  ccccc taga actgg tttcaag ccagt ct tata accct tata a ctttttc
Macaca Mulatta   c gaaaaag gaggg agtcgaa  ccccc taaa actgg tttcaag ccaat ct tata gcccc tata a ctttttc
Papio hamadryas  c gaaaaag gaggg agtcgaa  ccccc taaa actgg tttcaag ccagc ct tata gcccc tata a ctttttc
Cercopithicus    c gaaaaag gaggg agtcgaa  ccccc taaa accgg tttcaag ccaat cc tata gcccc tata a ctttttc
Colobus Guereza  t aaaaaag gaagg aatcgaa  ccttc tgaa gctgg tttcaag ccagc tc tata gcctc tata a ctttttc
Trachypithecus   t aaaaaag gaagg aatcgaa  cctcc tgaa actgg tttcaag ccaat tc tata tcctc tata a ctttttc
Cebus albifrons  c gaaaaag gaagg atttgaa  ccccc aaaa attgg tttcaag ccaat cc cata gaccc tatg a ctttttc
Nycticebus       c aagaaag ggagg aatcgaa  ccccc taaa attgg tttcaag ccaac cc cata accc  catg a ctttctt
Lemur Catta      c aagaaag gaagg aatcgaa  ccctc taaa attgg tttcaag ccaac cg cgta accac taca a ctttctt
Tarsius          c aagaaag gaagg aattgaa  ccccc taag attgg tttcaag ccaac ct cata accac tatg t ctttctt
Tupaia           c aagaaag gaagg aatcgaa  ccccc aaaa atcgg tttcaag ccaac tt cgta acctc tacg a ctttctt
Cynocephalus     c gagaaag gaagg agttgaa  ccctc caaa gatgg tttcaag ccaac cc cata gcccc tatg a ctttccc

Human NUMT sequences:-
NT_004350.18|Hs1_4507   chromosome  1    46629-46697
                 C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
NT_019273.18|Hs1_19429  chromosome  1  3254772-3254726
                      AAAG GAAGG AATTGAA  CCTCC AGAA ACTGG TTTCAAG CCAAT CC CAT
NT_032977.8|Hs1_33153   chromosome  1 25811094-25811053
                      AAAG GAAGG AATTGAA  CCTCC CAAA ACTGG GTTTAAG CCAAC
NT_022135.15|Hs2_22291  chromosome  2 19740948-19740997
                    AAAAAG GAGGG AATCGAA  CCCCC CACA GACTGG TTTCAAG CCAAT CC CAT
NT_022135.15|Hs2_22291  chromosome  2 20848131-20848082
                    AAAAAG GAGGG AATCGAA  CCCCC CAGA GACTGG TTTCAAG CCAAT CC CAT
NT_005612.15|Hs3_5769   chromosome  3 26936313-26936379
                    AAAAAG GAAGG AATCCAA  CCCCC TAAA ACTGG TTTCAAG CCAAC CT CATA ACCTC TATG A CTTTTTC
NT_005612.15|Hs3_5769   chromosome  3 59871922-59871864
                            AAGG AATTGAA  CCCCC AAAA ACTGG TTTCAAG CCAAT CC CATA ACCTC TATG A CTTTTT
NT_022459.14|Hs3_22615  chromosome  3 23344711-23344650
                      AAAG GAAGG AATTGAA  TCCCC AGAA ACTGG TTTCAAG ACAAT CC CATA ACCTC TATG A CTTT
NT_006576.15|Hs5_6733   chromosome  5  5386586-5386524
                    AAAAAG GAAGG AATTGAA  CCCCC AAAG ACTGG TTTCAAG CCAAT CC CATA ACCTC CATG A CTT
NT_034772.5|Hs5_34934   chromosome  5   160954-160895
                      AAAG GAAAG ACTCGAA  CCCCC AGAA ACTGG TTTCAAG CCAAT CC CATA ACCTC TATG A CT
NT_034772.5|Hs5_34934   chromosome  5  1804394-1804328
                    AAAAAG GAAGG AATGAAA  CCTCC TAAA GCTGG TTTCAAG CCAAC CC CACA GCCTC TATG A CTTTTTC
NT_007758.11|Hs7_7915   chromosome  7  6830155-6830107
                    AAAAAG GAAGG AATCGAA  CTCCC AGAG ACTGG TTTCAAG CCAAT CC CAT
NT_008583.16|Hs10_8740  chromosome 10 19902308-19902270
                      AAAG GAAGG AATCAAA  CCCCC AAAA .CTGG TTTCAAG CCA
NT_033899.7|Hs11_34054  chromosome 11  6837449-6837401
                    AAAAAG GAAGG AATCGAA  CCTCC TGAA ACTGG TTTCTAG CCAAT CC CAT
NT_009237.17|Hs11_9394  chromosome 11 38575674-38575733
                      AAAG GAAGG AATCAAA  CCTCC AGAA ACTGG TTTCAAG CCAAT CC CATA CCCTC TATG A CT
NT_010783.14|Hs17_10940 chromosome 17  9837000-9837024
                 C AAAAAAG GAAGG AATCGAA CCCCC  
NT_024862.13|Hs17_25018 chromosome 17   345097-345165
                 C AAAAAAG GAAGG AATTGAA  CCTCC TAAG GCTGG TTTCAAG CCAGC CT CATA ACCCC TATG A CTTTTTC

...............
Pan troglodytes  c aaaaaag gaagg aatcgaa  ccccc taaa gctgg tttcaag ccaac cc catg acctc catg a ctttttc

chromosome 12 11655643-11655575
                 C AAAAAAG GAAGG AATCGAA  CCCCC TAAA GCTGG TTTCAAG CCAAC CC CATG ACCTC CATG A CTTTTTC  

...............
Macaca Mulatta   c gaaaaag gaggg agtcgaa  ccccc taaa actgg tttcaag ccaat ct tata gcccc tata a ctttttc

NW_001122912.1 Macaca NUMT chromosome  8  3216459-3216391
                 C GAAAAAG GAGAG AGTCGAA  CCCCC TAAA ACTGG TTTCAAG CCAAT CT TATA GCCCC TATA A CTTTTTC
NW_001100386.1 Macaca NUMT chromosome 14 2735325-2735393
                 C GAAAAAG GAAGG AATCGAA  CCTCC TAAA ACTGG TTTCAAG CCAAC CC TATA ACCCC TATA T CTTTTTC  

...............

Bos taurus       T AAGAAAG GAAGG AATCGAA  CCCCC TACT ATTGG TTTCAAG CCAAC AT CATA ACCTC TATG T CTCTCTC

NW_001493748.1|Bt1_WGA132_3:647010-647079      Bos taurus chromosome  1
                 T AAGAAAG AAAGG AGTCAAAC CCCCC AACT ACTGG TTTCAAG CCAAC AT CATA GCCAT TACA T CTTTCTC
NW_001494558.1|Bt2_WGA206_3:21416-21484        Bos taurus chromosome  2
                 C CTAAAAG GAAGG AATCGAA  CCCCC TACT ATTGG TTTCAAG CCAAC AT CATA ACCAC TATG T CTCTCTC
NW_001494819.1|Bt3_WGA467_3:269283-269351      Bos taurus chromosome  3
                 T AAGAAAG GAAGG AATTGAA  CCCCG TACT ATTGG TTTCAAG CCAAC AT CATA ACCAC TATG T CTGTCTC
NW_001492779.1|Bt10_WGA1287_3:160783-160851    Bos taurus chromosome 10
                 T AAGAAAG TTATG TATCGAA  CCCCC TACT ACTGG TTTCATG TCTAC AT CATA ACCAC TATG T CTCTCTC
NW_001493305.1|Bt15_WGA1813_3:c137591-137523   Bos taurus chromosome 15
                 T AAGAAAG GAAGG AATTCAA  CCCTC TTCT ACTGG TTTCAAG CCAAC AT AACA ACCAT TATG T TTTTCTC
NW_001493932.1|Bt20_WGA2240_3:c1863462-1863390 Bos taurus chromosome 20
                 T AAAAAAG GAAGG AATTGAA  CCCTC TTTA ACTGG TTTCAAG CCAAT GC CATA ACCAC TATG T CTCTCTT
NW_001494078.1|Bt22_WGA2386_3:c354963-354895   Bos taurus chromosome 22
                 T AGGAAAG GAAGG AATCACA  CCCTC TTCT ACTGG TTTCAAG CAAAC AC CATA ATAAT TATG C ACTTCTC
NW_001494260.1|Bt24_WGA2568_3:1879755-1879823  Bos taurus chromosome 24
                 T AAGAAAG GAGTG AACCGAA  CCCTC TACT ACTGG TTTCAAG CCAAC AT CAAA GCTAC TATG T CTTTCTC

...............

Human Mutations found in published genealogical sequences:-
CRS              C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC

G7457C
EF184609(S.Afr.) C AAAAAAG GAACG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
A7460G
KAsq0055(Japan)  C AAAAAAG GAAGG AGTCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC 
7465.C
AY738997(Italy)  C AAAAAAG GAAGG AATCGAAC CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
7471.N
DQ305013(Afr_Am) C AAAAAAG GAAGG AATCGAA  CCCCCCNAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
A7472G
DQ246820(India)  C AAAAAAG GAAGG AATCGAA  CCCCC CGAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC 
7473G
DQ112830(Euro.)  C AAAAAAG GAAGG AATCGAA  CCCCC CAGA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
C7476T
AY195778(Cauca.) C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GTTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
A7490G
AY714050(India)  C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAGC CC CATG GCCTC CATG A CTTTTTC
C7492T
AY714031(India)  C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC TC CATG GCCTC CATG A CTTTTTC
C7493T
DQ112961(Africa) C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CT CATG GCCTC CATG A CTTTTTC 
G7498A
AF381992(Maur.)  C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG ACCTC CATG A CTTTTTC 
T7501A
KAsq0058(Japan)  C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCAC CATG A CTTTTTC 
T7502d
PDsq0139(Japan)  C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCT. CATG A CTTTTTC




2007