'tRNA-tyr' mutations and comparisons

The transfer RNA for tyrosine is one of the transfer RNA's of 'mitochondrial DNA'.
It is located at Bases 5826 - 5891. (All numbering is from CRS.)


Complemented     GGTAAAA TG GCTG  AGTG AAGC A TTGGA CTGTAAA TCTAA AGAC AGGGG TTAGG CCTCT TTTTACC A
 
                 5826             5839                      5858                 5875
Homo sapiens     t ggtaaaa agagg  cctaa    cccct gtct ttaga tttacag tccaa t gctt cact  cagc ca ttttacc
Pan paniscus     t ggtaaaa agagg  cttaa    cccct gtct ttaga tttacag tccaa t gctt cact  cagc ca ttttacc
Pan troglodytes  t ggtaaaa agagg  cttaa    cccct gtct ttaga tttacag tccaa t gctt cact  cagc ca ttttacc
Gorilla gorilla  t ggtaaaa agagg  cccag    cctct gtct ttaga tttacag tccaa t gcct tact  cagc ca ttttacc
Pongo pygmaeus   t ggtaaaa agagg  tctga    cccct gttc ttaga tttacag cctaa t gcct taact cggc ca ttttacc
Pongo abelii     t ggtaaaa agagg  tctaa    cccct gttc ttaga tttacag cctaa t gcct taact cggc ca ttttacc
Hylobates lar    t ggcaaaa agagg  ttcca    cctct gtcc ttaga tttacag tctaa t gctt tact  cagc ca ttttacc
Macaca Sylvanus  t gataaaa ggggg  actaga   ccccc atct ttagg tttacag cctaa t gctt att   cagc ca ttttacc
Macaca Mulatta   t ggtaaaa ggggg  actaaa   ccccc gtct ttagg tttacag cctaa t actt act   cagc ca ttttacc
Papio hamadryas  t ggtaaaa agagg  gttaga   cctct gtct ttagg tttacag cctaa t gcct act   cagc ca ttttacc
Cercopithicus    t ggcaaaa agagg  gtcaga   cctct gtct tcagg tttacag cccaa t gctt act   cagc ca ttttacc
Colobus Guereza  t ggtaaaa agagg  acttaa   cccct gtct ttagg tttacag cctaa t gcta act   cagc ca ttctacc
Trachypithecus   t ggtaaaa agagg  gcttaaa  cctct gtcc ttaga tttacag cctaa t gctt act   cagc ca ttttacc
Cebus albifrons  t ggtaaaa agagg  gggtcact tctct gtct ttaga tttacag tctaa t gctt act   cagc ca ttttacc
Nycticebus       t ggtaaaa agggg  atttga   cccct attt ttgga tttacag tccaa t gctc tact  cagc ca ttttacc
Lemur Catta      t gatagaa agagg  gggttt   cctct gttc ttaga tttacag tctaa t gcct aact  cagc ca ttctatc
Tarsius          t ggtaaaa agggg  actacacc cctat tttt agatt tacag   cctaa t gctc ttt   cagc ca ttttacc
Tupaia           t ggtaaaa agagg  gcttaacc tctgt cttt agatt tacag   tctaa t gctt act   cagc ca ttttacc
Cynocephalus     t ggtgaag gaggg  acctacc  cccgt gctt agatt tacag   tctaa c gctt act   cagc ca cctcacc
Camelus drom.    t ggtaaga agagg  gctctcacctctgt cttt agatt tacag   tccaa t gcct act   cggc ca tcttacc


NUMT sequences:-
NT_004350.18|Hs1_4507    chromosome  1     45008-45073
                 T GGTAAAA AGAGG  CTTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC
NT_004836.17|Hs1_4993    chromosome  1   2862228-2862163
                 T GGTAAAA AGAGG TCTTGA    CCTCT GTCT TTAGA TTTATAG TCTAA T GCTT .ACT  CAGT CA TTTTACC
NT_019273.18|Hs1_19429   chromosome  1   3256397-3256362
                                                        aga tttacag tctaa t gctt .act  cagc ca tttaacc 
NT_113794.1|Hs1_111513   chromosome  1     10380-10446
                 T GGTAAAA ACAGG CGTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAGT CA TTTTACC
NT_113795.1|Hs1_111514   chromosome  1    127184-127118
                 T GGTAAAA ACAGG CGTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAAT CA TTTTACC
NT_113796.1|Hs1_111515   chromosome  1       658-724
                 T GGTAAAA ACAGG CGTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAGT CA TTTTACC
NT_032977.8|Hs1_33153    chromosome  1  64371492-64371429
                 t ggtaaaa agaga gctcaa    ..tct ctct ttaga tttatag tctaa a gctt .act  cagc ca ttttacc
NT_005403.16|Hs2_5560    chromosome  2  53694116-53694051
                 T GGTAAAA AGAGG CCTTAA    CCTCT GTCT TTAGA TTTACAG TCTAA T GCTT .GCT  CAGC CA TTTTACC
NT_005403.16|Hs2_5560    chromosome  2   6329772-6329708
                 T GGTAAAA AGAGG  TTTAG    CCTCT GTCT TTAGA TTTACAG TCTAA T GCCT TACT  CAGC CA TTTTAC
NT_005403.16|Hs2_5560    chromosome  2  62852332-62852384
                              GG CCTTGA    CCTCT GTCT TCAGA TTTACAG TCTAA T GCTT .GCT  CAGC CA TTTTA
NT_022135.15|Hs2_22291   chromosome  2   6491933-6491988
                 t ggtaaaa ggagg ccttga    cctcc atct tttga tttacag tctaa c gctt .act  cagt ca ttttacc 
NT_022135.15|Hs2_22291   chromosome  2  19739321-19739385
                 t ggtaaaa agagg tcttga    tctct gttt ttaga tt.acag tctaa t gctt .act  cagc ca ttttacc
NT_022135.15|Hs2_22291   chromosome  2  20849638-20849574
                 T GGTAAAA AGAGG TCTTGA    CCTCT GTTT TCAGA TT.ACAG TCTAA T GCTT .ACT  CAGC CA TTTTACC
NT_022135.15|Hs2_22291   chromosome  2  29682808-29682743
                 T GGTAAAA AGAGG CCTTGG    CCTCT GTAT TTAGA TTTACAG TCTAA T GTTT .ACT  CAGT CA TTTTACC
NT_026970.9|Hs2_27130    chromosome  2    240350-240311
                 T GGTAAAA AGAGG TCTTGA    CCTCT GTTT TCAGA TGTACAG
NT_016354.18|Hs4_16510   chromosome  4  80930611-80930549
                     TAAAA AGAGG CCTTGA    CCTCT GTCT TTAGA TTTACAG TCTAA T GCTT .ATT  CAGC CA CTTTACC
NT_113889.1|Hs4_111608   chromosome  4     15798-15864
                 T GGTAAAA ACAGG CCTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAGT CA TTTTACC 
NT_007758.11|Hs7_7915    chromosome  7   1603446-1603385
                      AAAA AGAGG CCTTGA    CCTCT GTCT TTAGA TTTACAG TCTAA T GCTT .ACT  CAGC CA TTTTACC
NT_007758.11|Hs7_7915    chromosome  7   6832039-6831973
                 T GGTAAAA AGAGA CCTTTGA   CCTCT GTTT TCAGA TTTACAG TCTAA T GCTT .GCT  CAGC CA TTTTACC
NT_007914.14|Hs7_8071    chromosome  7   2093490-2093425
                 T GGTAAAA AGAGG CCTTGA    CCTCT GTCT TTAGA TTTACAG TCTAA T GCTT .ACT  CAGC CA TTTTACC
NT_023629.12|Hs7_23785   chromosome  7    254001-254047
                     TAAAA AGAGG CCTTGA    CCTCT GTCT TTAGA TTTACAG TCTAA T GCTT
NT_023629.12|Hs7_23785   chromosome  7    254065-254108
                                              CT GTCT TTAGA TTTACAG TCTAA T GCTT .ACT  CGGC CT TTTTACC
NT_008046.15|Hs8_8203    chromosome  8  25165016-25164951
                 t ggtaaaa agagg ccttaa    cctcc atct tcaga tttgcag tctaa t gttt .act  cagc ca ttttacc 
NT_008046.15|Hs8_8203    chromosome  8  47986189-47986254 
                 t ggtaaaa agagg ccttga    cctct gtct tcaga tttacag tctaa g gctt .att  cagt ca ttttacc
NT_008413.16|Hs9_8570    chromosome  9   5086587-5086652
                 T GGTAAAA AGAGG TCTTGA    CCTCT GTCT TTAGA TTTACAG TCCAA T GCTT .ACT  CAGC CA TTTTACC
NT_008470.18|Hs9_8627    chromosome  9   2622750-2622685
                 T GGTAAAA AGAGG  TTTAG    CCTCT GTCC TTAGA TTTACAG TCTAA T GCTT TACT  CAGC CA TTTTACC
NT_023935.17|Hs9_24091   chromosome  9  12344148-12344093 
                             AGG CCTTGA    CCTCT GTCT TTAGA TTTATAG TCTAA T GCTT .ACT  CAGC CA TTTTACC
NT_023935.17|Hs9_2409    chromosome  9  10520847-10520784
                 t gataaaa ..agg ccttga    cctct gtct ttaaa tttacag tctaa t gttt .act  cagc ca ttttaca
NT_008583.16|Hs10_8740   chromosome 10  19903914-19903852
                     TAAAA AGATG GCTCAA    CATCT GTCT TTAGA TTTACAG TCCAA T GCTT .GCT  CAGC CA TTTTACC
NT_008583.16|Hs10_8740   chromosome 10  29722158-29722205
                 T GGTAAAA AGAGG CCTTGA    CCTCT GTCT TTAGA TTTACAG TCTAA T GT
NT_035040.4|Hs10_35202   chromosome 10   1588990-1589034
                 t ggtaaaa agagg gctcaa    CCT.. GTCT CTAGA TTTACAG TCTAA T GCTT .GCT  CTGC CA TTTTACC
NT_033899.7|Hs11_34054   chromosome 11   6839058-6838993
                 T GGTAAAA AGAGG CCTTGA    CCTCT GTCT TTAGA TTTATAG TCTAA T GCTT .ACT  CAGC CA TTTTACC
NT_026437.11|Hs14_26604  chromosome 14  13953834-13953769
                 T GGTAAAA AGAGG  CTTAG    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC
NT_037887.4|Hs16_37891   chromosome 16   3359298-3359263
                                                        aga tttacag tctaa t gctt .act  cagc ca ttttacc
NT_010718.15|Hs17_10875  chromosome 17  19105896-19105961
                 T GGTAAAA AGAGG TCTTGA    CCTCT GTCT TTAGA TTTACAG TCTCA T GCTT .ACT  CAGC CA TTTTACC
NT_024862.13|Hs17_25018  chromosome 17    343511-343550
                                                    T TTAGA TTTACAG TCTAA T GCTT TGCT  CAGC CA TCTTACC
NT_113954.1|Hs21_111673  chromosome 21     88777-88843
                 T GGTAAAA ACAGG CGTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAGT CA TTTTACC
NT_113955.1|Hs21_111674  chromosome 21     51870-51805
                 T GGTAAAA AGAGG  CTTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC
NT_011512.10|Hs21_11669: chromosome 21 22925027-22924963
                 C AGTAAAA AGAGG  GTTCAA   CCTCT GTCT TTAGA TT.ACGG ATTAA G GCTT .CCT  CAGC CA TTTCACT
NT_113961.1|Hs22_111680  chromosome 22     78231-78297
                 T GGTAAAA ACAGG CCTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  CAGT CA TTTTACC
NT_011630.14|HsX_11787   chromosome  X   2759326-2759272
                              GG CCTTGG    CCTCT GTCT TTAGA TTTACAG TCTAA T GCTT .ACC  CAGC CA TTTTACC
NT_113819.1|HsY_111538   chromosome  Y     94993-95059
                 T GGTAAAA ACAGG CCTTGA    CCTCT GTTT TTAGA TGTACAG TCTAA T GCCC TACT  TAGT CA TTTTACC


CRS              T GGTAAAA AGAGG  CCTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC

..................
Pan troglodytes  t ggtaaaa agagg  cttaa    cccct gtct ttaga tttacag tccaa t gctt cact  cagc ca ttttacc

NW_001229479.1 Pan troglodytes NUMT chromosome  1  17365-17430
                 T GGTAAAA AGAGG  CTTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC
NW_001232095.1 Pan troglodytes NUMT chromosome 2B  46293-46229
                 T GGTAAAA AGAGG  TCTTGA   CCTCT GTTT TTAGA CT-ACAG TCTAA T GCTT .ACT  CAGC CA TTTTACC  
 
..................
Macaca Mulatta   t ggtaaaa ggggg  actaaa   ccccc gtct ttagg tttacag cctaa t actt .act  cagc ca ttttacc

NW_001112559.1 Macaca NUMT chromosome  2
                 T GGTAAAA GGGGG  ACTAAA   CCCCC ATCT TTAGG TTTACAG CCTAA T ACTT .ACT  CAGC CA TTTTACC

..................

Bos taurus       T GGTAAAA AGAGG AGTCAAA   CCTCT ATCT TTAGA TTTACAG TCTAA T GCTT TGCT  CAGC CA TTTTACC

NW_001494660.1|Bt2_WGA308_3:c1336680-1336616     Bos taurus chromosome  2
                 T CACAATG AGAGG ACTCAA    CCTCT GTCT TTAAA TTTCCA. TCTAA T GCTT .ACT  CAGC CG TTTTTGC
NW_001494121.1|Bt22_WGA2429_3:c867000-866933     Bos taurus chromosome 22
                 G CTAGGCA AAAAG AGGACTCC  AGCCC ATCT TTAGA TATACAG TCTAA T GCTT .ACT  TAGC CA TTTTATC
NW_001494464.1|Bt28_WGA2772_3:c455413-455347     Bos taurus chromosome 28
                 A TAAACAA AATGG AATTAAA   CCTCT GTCT TTAGA TTTACAG TCTAA T GCTT .ACT  CAGC CA TTCTACC

..................

Human Mutations found in published genealogical sequences:-
CRS              T GGTAAAA AGAGG  CCTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC

T5826C
DQ112920(Africa) C GGTAAAA AGAGG  CCTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC
G5385A
DQ473537(Turkey) T GGTAAAA AAAGG  CCTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC
A5836G
AY714047(India)  T GGTAAAA AGGGG  CCTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC
C5839T
AY738052(Italy)  T GGTAAAA AGAGG  TCTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC
A5843G
AY289075(Nasioi) T GGTAAAA AGAGG  CCTAG    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC
C5846T
AY255163(China)  T GGTAAAA AGAGG  CCTAA    CCTCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC
C5875T
AY713988(India)  T GGTAAAA AGAGG  CCTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT TACT  CAGC CA TTTTACC

Neandertal
C5840T
AM948965         T GGTAAAA AGAGG  CTTAA    CCCCT GTCT TTAGA TTTACAG TCCAA T GCTT CACT  CAGC CA TTTTACC

Neandertal                                                           CCAA T GCTT CACT  CAGC CA TTTTACC
(101673_3693_1973/1-48)



2008